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相互作用的随机布尔网络

Interacting Random Boolean Networks
课程网址: http://videolectures.net/eccs07_damiani_irb/  
主讲教师: Chiara Damiani
开课单位: 摩德纳大学
开课时间: 2007-11-29
课程语种: 英语
中文简介:
随机布尔网络(RBN)作为遗传调控网络的模型被广泛研究。虽然许多研究都致力于孤立随机布尔网络的动力学,这可能被视为孤立细胞的模型,但本文考虑了一组相互作用的RBN,这可能被视为一个组织或一个单克隆群体的简化模型。为此,我们引入了一个细胞自动机(CA)模型,其中每个细胞ITE被RBN占用。细胞间的相互影响是通过让RBN中某些基因的激活受RBN中某些基因的激活的影响来模拟的。结果表明,CA的动态特性远不是微不足道的,引入了不同的测量方法,以提供整体行为的指示。从某种意义上讲,文中给出了CA的阶数受相互作用强度的影响,并观察到了明显的不同行为。我们提出了将这些行为分为四类,根据交互强度对顺序的各种度量的影响方式。结果表明,孤立RBN的动力学性质影响了由这四类RBN组成的CA的概率,因此也影响了高交互强度导致更大或更小阶次的概率。
课程简介: Random Boolean networks (RBN) have been extensively studied asmodels of genetic regulatory networks. While many studies have been devoted tothe dynamics of isolated random Boolean networks, which may considered asmodels of isolated cells, in this paper we consider a set of interacting RBNs,which may be regarded as a simplified model of a tissue or a monoclonal colony.In order to do so, we introduce a cellular automata (CA) model, where each cellsite is occupied by a RBN. The mutual influence among cells is modelled byletting the activation of some genes in a RBN be affected by that of some genes inneighbouring RBNs. It is shown that the dynamics of the CA is far from trivial.Different measures are introduced to provide indications about the overallbehaviour. In a sense which is made precise in the text, it is shown that the degreeof order of the CA is affected by the interaction strength, and that markedlydifferent behaviours are observed. We propose a classification of these behavioursinto four classes, based upon the way in which the various measures of order areaffected by the interaction strength. It is shown that the dynamical properties ofisolated RBNs affect the probability that a CA composed by those RBNs belongsto one of the four classes, and therefore also affects the probability that a higherinteraction strength leads to a greater, or a smaller, degree of order.
关 键 词: 基因; 随机布尔网络; 遗传; 生物细胞学
课程来源: 视频讲座网
最后编审: 2019-12-07:lxf
阅读次数: 75