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打结的生命线

The knotted strands of life
课程网址: http://videolectures.net/kolokviji_micheletti_strands/  
主讲教师: Cristian Micheletti
开课单位: 国际高等学校
开课时间: 2013-04-15
课程语种: 英语
中文简介:
结是我们日常生活的一部分。在某些情况下,它们可以起到有用的作用,比如说攀登或航行。在其他情况下,它们可能是一种麻烦,正如我们从断开延长电缆或耳机线的费力程序中所知道的。像延长电缆一样,长而密的生物聚合物如DNA也可以打结。在一些生物系统中,DNA打结的有害影响(例如阻碍转录和复制)被切割、分离和重新密封DNA链的酶所阻止。然而,在只有DNA自身空间的非常小的病毒中,由于受到严格的限制,结不可避免地会累积。然而,这些可以通过实验检测到的结并不能阻止DNA从病毒转移到被感染的细胞。为了深入了解这些重要的过程,我们分析了病毒DNA打结实验所提供的关于病毒DNA包装的有力但间接的线索。特别是,从某些结型(环面结)的丰富性出发,我们确定了接触DNA链的排列倾向对指导封装DNA的空间组织和打结起着重要作用。通过明确模拟这种排列相互作用,这类似于在胆甾体材料中观察到的相互作用,我们进一步研究了DNA喷射过程,并观察到它不受打结程度的影响。
课程简介: Knots are part of our everyday life. In some cases they can serve useful purposes, think for instance of climbing or sailing. In other cases they can be a nuisance, as we know from the laborious procedures of disentangling extension cables or headphone wires. Like extension cables, long and densely packed biopolymers such as DNA can be knotted too. In several biological systems the detrimental effects of DNA knotting (which e.g. hinders the transcription and replication) are kept at bay by enzymes that cut, disentangle and reseal DNA strands. However, within very small viruses, where there is space only for the DNA itself, knots inevitably accumulate because of the tight confinement. Yet these knots, which can be experimentally detected, do not prevent the translocation of the DNA from the virus to the infected cell. To gain insight into these important processes, we analysed the powerful, albeit indirect clues on viral DNA packaging offered by experiments on viral DNA knotting. In particular, starting from the abundance of certain knot types (torus knots) we established that the aligning tendency of contacting DNA strands plays a major role in guiding the spatial organization and knotting of the packaged DNA. By explicitly modelling this aligning interaction, which is analogous to the one observed in cholesteric materials, we further investigated the DNA ejection process and observed that it is not affected by the degree of knotting.
关 键 词: 生物系统; 转录和复制; 病毒DNA
课程来源: 视频讲座网
最后编审: 2019-12-24:lxf
阅读次数: 54