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原始细胞自主性:通过自制边界连接过程

Protocell autonomy: linking processes through self-made boundaries
课程网址: http://videolectures.net/bzid2011_ruiz_mirazo_protocell/  
主讲教师: Kepa Ruiz-Mirazo
开课单位: 巴斯克国家大学
开课时间: 2011-10-21
课程语种: 英语
中文简介:
自治并不意味着独立。相反,它指的是系统将自己的操作规则定义为这样一个系统的能力,包括与环境交互的规则。这适用于能够通过转化外部可用物质和能量资源来构建边界(脂质膜)和其他功能成分(蛋白质、糖、核酸等)的生物系统。它们通过将发生在非均匀、远离平衡的热力学条件下的复杂反应过程网络(包括时间和空间上的)组合在一起并加以协调来实现这一点。因此,生物系统,必然是开放的系统,构成了一个动态的过程组织,它与培养它们的惰性环境明显不同,同时收集它们正在进行的活动的产物。在这篇文章中,我将论证自主性,在其最基本和最小的意义上,必须在从复杂的物理化学系统到最简单的生物系统的转变过程中很早就得到发展。除了目前几家实验室提供的相关实验证据外,还将引入一个理论模型来说明如何做到这一点:即通过自催化化学反应网络与形成系统膜的脂质自组装过程的耦合。这标志着一个重要的转变,在这个转变中,“囊泡”(封闭的双层)转化为“原细胞”,因为它们获得了对自身边界产生的控制,这是实现自主个性化和系统级调节的关键步骤。这个想法将会在由不同类型的脂质分子组成的原始细胞(其中一些是内部合成的)和更复杂的脂质与寡肽结合的情况下(图2)进行说明,从而带来更丰富的动态和调控行为空间。因此,脂质边界不会被描绘成障碍,作为与周围环境分离或分离的分子结构,而是作为过程的链接物:,作为控制能量-物质流动的各种机制被锚定的有机界面,实际上使生物系统的连续构造动力学成为可能。因此,边界和内部反应网络之间的互补关系将被强调,这将遵循自生理论的步骤,但将对这一思想作出更有物理基础和更新的解释。此外,自主性将被认为是解释生命现象的必要但不充分的理论结构,其进化-历史-集体维度也需要特别考虑。
课程简介: Autonomy does not mean independence. It refers, rather, to the capacity of a system to define its own rules of operation as such a system, including the rules of interaction with its environment. This applies to biological systems which are able to build their boundaries (lipid membranes) and other functional components (proteins, sugars, nucleic acids, etc.) through the transformation of externally available material and energetic resources. They manage to do so by putting together and coordinating (both spatially and temporally) a complex network of reaction processes that take place in non-homogeneous, far-from-equilibrium thermodynamic conditions. Thus, biological systems, being necessarily open systems, constitute a dynamic organisation of processes that becomes clearly distinct from the inert environment that nurtures them and, at the same time, collects the products of their ongoing activity. In this article, I will argue that autonomy, in its most basic and minimal sense, had to be developed quite early in the sequence of transitions that led from complex physicalchemical systems to the simplest biological ones. Apart from relevant experimental evidence provided in present days by several labs, a theoretical model will be introduced to show how this could be achieved: namely, through the coupling of autocatalytic chemical reaction networks with processes of lipid self-assembly forming the membrane of the system. This marks an important transition, in which »vesicles« (closed bilayers) transform into »protocells «, for they gain control on the production of their own boundaries, a crucial step for autonomous individuation and system-level regulation. The idea will be illustrated both for protocells made with various types of lipidic molecules, some of which are internally synthesized (Fig. 1), and for more complex cases in which lipids are combined with oligopeptides (Fig. 2), bringing about a richer space of dynamic and regulatory behaviours. Accordingly, lipid boundaries will not be portrayed as barriers, as molecular structures that serve for separation or disconnection with the surrounding milieu but, rather, as linkers of processes: i.e., as the organic interfaces in which diverse mechanisms to control energy-matter flows are anchored, making actually possible the continuous constructive dynamics of biological systems. The complementary relationship between boundaries and internal network of reactions will be, therefore, highlighted, following the steps of the autopoietic theory, but giving a more physically grounded and updated interpretation of the idea. Furthermore, autonomy will be claimed as a necessary but not sufficient theoretical construct to account for living phenomena, whose evolutionary-historical-collective dimensions also need to be taken specifically into account.
关 键 词: 原始细胞; 自立性; 环境交互; 能量转化; 自生理论
课程来源: 视频讲座网
最后编审: 2019-10-22:cwx
阅读次数: 29