0


概念桥梁:基于生物医学概念演变的桥梁揭秘

Concept-Bridges: Uncovering Bridges Based on Biomedical Concept Evolution
课程网址: http://videolectures.net/kdd2018_jha_concept-bridges_evolution/  
主讲教师: Kishlay Jha
开课单位: 纽约州立大学布法罗分校
开课时间: 2018-11-23
课程语种: 英语
中文简介:
鉴于两个相关主题(A和C)在其他方面是不相关的,例如两个概念:一种疾病(“偏头痛”)和一种治疗物质(“镁”),本文试图找到以有意义的方式连接它们的概念桥梁(例如血清素(B))。这种挖掘隐性联系的问题被称为假设生成,其加速科学进步的潜力被广泛认可。几乎所有解决这个问题的现有研究都忽略了概念的时间动态。这是有限的,因为众所周知,概念的语义随着时间的推移而演变。为了克服这个问题,在本研究中,我们将这个问题定义为挖掘时间感知的Top-k概念桥,并在这样做的过程中提供了一种系统化方法来形式化这个问题。具体地说,所提出的模型首先从语料库中提取相关实体,在特定时间的潜在空间中表示它们,然后对其进行进一步推理,以生成新颖的、可实验验证的假设。该方法的关键挑战是学习一个映射函数,该函数编码概念的时间特征,并对齐跨时间潜在空间。为了解决这个问题,我们提出了一种有效的算法,该算法学习对输入查询的全局和局部语义都敏感的精确映射。对最大可用生物医学语料库进行的定性和定量评估证实了利用时间动力学的重要性,并表明生成的假设是新颖的,值得临床试验。
课程简介: Given two topics of interest (A and C) that are otherwise disconnected - for instance two concepts: a disease ("Migraine") and a therapeutic substance ("Magnesium") - this paper attempts to find the conceptual bridges (e.g., serotonin (B)) that connects them in a meaningful way. This problem of mining implicit linkage is known as hypotheses generation and its potential to accelerate scientific progress is widely recognized. Almost all of the prior studies to tackle this problem ignore the temporal dynamics of concepts. This is limiting because it is known that the semantic meaning of a concept evolves over time. To overcome this issue, in this study, we define this problem as mining time-aware Top-k conceptual bridges, and in doing so provide a systematic approach to formalize the problem. Specifically, the proposed model first extracts relevant entities from the corpus, represents them in time-specific latent spaces, and then further reasons upon it to generate novel and experimentally testable hypotheses. The key challenge in this approach is to learn a mapping function that encodes the temporal characteristics of concepts and aligns the across-time latent spaces. To solve this, we propose an effective algorithm that learns precise mapping sensitive to both global and local semantics of the input query. Both qualitative and quantitative evaluations performed on the largest available biomedical corpus substantiate the importance of leveraging temporal dynamics and suggests that the generated hypotheses are novel and worthy of clinical trials.
关 键 词: 鉴于两个相关主题; 加速科学进步; 挖掘时间感知的Top-k概念桥; 局部语义都敏感
课程来源: 视频讲座网
数据采集: 2023-02-01:cyh
最后编审: 2023-02-01:cyh
阅读次数: 20